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| 1. |  | POTAPOV, A. M.; SUN, X.; BARNES, A. D.; BRIONES, M. J. I.; BROWN, G. G.; CAMERON, E. K.; CHANG, C.-H.; CORTET, J.; EISENHAUER, N.; FRANCO, A. L. C.; FUJII, S.; GEISEN, S.; GONGALSKY, K. B.; GUERRA, C.; HAIMI, J.; HANDA, I. T.; JANION-SCHEEPERS, C.; KARABAN, K.; LINDO, Z.; MATHIEU, J.; MORENO, M. L.; MURVANIDZE, M.; NIELSEN, U. N.; SCHEU, S.; SCHMIDT, O.; SCHNEIDER, C.; SEEBER, J.; TSIAFOULI, M. A.; TUMA, J.; TIUNOV, A. V.; ZAITSEV, A. S.; ASHWOOD, F.; CALLAHAM, M.; WALL, D. H. Global monitoring of soil animal communities using a common methodology. Soil Organisms, v. 94, n. 1, p. 55-68, Apr. 2022.| Biblioteca(s): Embrapa Florestas. |
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Registro Completo
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Biblioteca(s): |
Embrapa Agricultura Digital; Embrapa Pecuária Sudeste. |
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Data corrente: |
24/10/2014 |
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Data da última atualização: |
16/11/2022 |
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Tipo da produção científica: |
Artigo em Periódico Indexado |
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Circulação/Nível: |
A - 1 |
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Autoria: |
SOMAVILLA, A. L.; SONSTEGARD, T. S.; HIGA, R. H.; ROSA, A. do N.; SIQUEIRA, F.; SILVA, L. O. C. da; TORRES JUNIOR, R. A. de A.; COUTINHO, L. L.; MUDADU, M. de A.; ALENCAR, M. M. de; REGITANO, L. C. de A. |
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Afiliação: |
A. L. SOMAVILLA, Programa de Pós-Graduação em Genética e Melhoramento Animal, UNESP/FCAV, Jaboticabal, Brasil; T. S. SONSTEGARD, Bovine Functional Genomics Laboratory, ANRI, USDA-ARS, Beltsville, MD, USA; ROBERTO HIROSHI HIGA, CNPTIA; ANTONIO DO NASCIMENTO ROSA, CNPGC; FABIANE SIQUEIRA, CNPGC; LUIZ OTAVIO CAMPOS DA SILVA, CNPGC; ROBERTO AUGUSTO DE A TORRES JUNIOR, CNPGC; L. L. COUTINHO, Escola Superior de Agricultura Luiz de Queiroz (Esalq), USP, Piracicaba, Brasil; MAURICIO DE ALVARENGA MUDADU, CPPSE; MAURICIO MELLO DE ALENCAR, CPPSE; LUCIANA CORREIA DE ALMEIDA REGITANO, CPPSE. |
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Título: |
A genome-wide scan for selection signatures in Nellore cattle. |
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Ano de publicação: |
2014 |
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Fonte/Imprenta: |
Animal Genetics, v. 45, n. 6, p. 771-781, dec. 2014 |
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DOI: |
10.1111/age.12210 |
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Idioma: |
Inglês |
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Conteúdo: |
Brazilian Nellore cattle (Bos indicus) have been selected for growth traits for over more than four decades. In recent years, reproductive and meat quality traits have become more important because of increasing consumption, exports and consumer demand. The identification of genome regions altered by artificial selection can potentially permit a better understanding of the biology of specific phenotypes that are useful for the development of tools designed to increase selection efficiency. Therefore, the aims of this study were to detect evidence of recent selection signatures in Nellore cattle using extended haplotype homozygosity methodology and BovineHD marker genotypes (>777 000 single nucleotide polymorphisms) as well as to identify corresponding genes underlying these signals. Thirty-one significant regions (P < 0.0001) of possible recent selection signatures were detected, and 19 of these overlapped quantitative trait loci related to reproductive traits, growth, feed efficiency, meat quality, fatty acid profiles and immunity. In addition, 545 genes were identified in regions harboring selection signatures. Within this group, 58 genes were associated with growth, muscle and adipose tissue metabolism, reproductive traits or the immune system. Using relative extended haplotype homozygosity to analyze high-density single nucleotide polymorphism marker data allowed for the identification of regions potentially under artificial selection pressure in the Nellore genome, which might be used to better understand autozygosity and the effects of selection on the Nellore genome. MenosBrazilian Nellore cattle (Bos indicus) have been selected for growth traits for over more than four decades. In recent years, reproductive and meat quality traits have become more important because of increasing consumption, exports and consumer demand. The identification of genome regions altered by artificial selection can potentially permit a better understanding of the biology of specific phenotypes that are useful for the development of tools designed to increase selection efficiency. Therefore, the aims of this study were to detect evidence of recent selection signatures in Nellore cattle using extended haplotype homozygosity methodology and BovineHD marker genotypes (>777 000 single nucleotide polymorphisms) as well as to identify corresponding genes underlying these signals. Thirty-one significant regions (P < 0.0001) of possible recent selection signatures were detected, and 19 of these overlapped quantitative trait loci related to reproductive traits, growth, feed efficiency, meat quality, fatty acid profiles and immunity. In addition, 545 genes were identified in regions harboring selection signatures. Within this group, 58 genes were associated with growth, muscle and adipose tissue metabolism, reproductive traits or the immune system. Using relative extended haplotype homozygosity to analyze high-density single nucleotide polymorphism marker data allowed for the identification of regions potentially under artificial selection pressure in the Nellore genome, whic... Mostrar Tudo |
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Palavras-Chave: |
Desequilíbrio de ligação; Homozigose do haplótipo estendido; Polimorfismo de nucleotídeo único; Relative extended haplotype homozygosity; Single nucleotid; Single nucleotide polymorphisms. |
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Thesagro: |
Bos Indicus; Gado de corte. |
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Thesaurus NAL: |
Beef cattle; Genotyping; Linkage disequilibrium; Single nucleotide polymorphism. |
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Categoria do assunto: |
G Melhoramento Genético
S Ciências Biológicas |
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URL: |
https://ainfo.cnptia.embrapa.br/digital/bitstream/item/110576/1/PROCI-2014.00083-2.pdf
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Marc: |
LEADER 02827naa a2200397 a 4500
001 1998406
005 2022-11-16
008 2014 bl uuuu u00u1 u #d
024 7 $a10.1111/age.12210$2DOI
100 1 $aSOMAVILLA, A. L.
245 $aA genome-wide scan for selection signatures in Nellore cattle.$h[electronic resource]
260 $c2014
520 $aBrazilian Nellore cattle (Bos indicus) have been selected for growth traits for over more than four decades. In recent years, reproductive and meat quality traits have become more important because of increasing consumption, exports and consumer demand. The identification of genome regions altered by artificial selection can potentially permit a better understanding of the biology of specific phenotypes that are useful for the development of tools designed to increase selection efficiency. Therefore, the aims of this study were to detect evidence of recent selection signatures in Nellore cattle using extended haplotype homozygosity methodology and BovineHD marker genotypes (>777 000 single nucleotide polymorphisms) as well as to identify corresponding genes underlying these signals. Thirty-one significant regions (P < 0.0001) of possible recent selection signatures were detected, and 19 of these overlapped quantitative trait loci related to reproductive traits, growth, feed efficiency, meat quality, fatty acid profiles and immunity. In addition, 545 genes were identified in regions harboring selection signatures. Within this group, 58 genes were associated with growth, muscle and adipose tissue metabolism, reproductive traits or the immune system. Using relative extended haplotype homozygosity to analyze high-density single nucleotide polymorphism marker data allowed for the identification of regions potentially under artificial selection pressure in the Nellore genome, which might be used to better understand autozygosity and the effects of selection on the Nellore genome.
650 $aBeef cattle
650 $aGenotyping
650 $aLinkage disequilibrium
650 $aSingle nucleotide polymorphism
650 $aBos Indicus
650 $aGado de corte
653 $aDesequilíbrio de ligação
653 $aHomozigose do haplótipo estendido
653 $aPolimorfismo de nucleotídeo único
653 $aRelative extended haplotype homozygosity
653 $aSingle nucleotid
653 $aSingle nucleotide polymorphisms
700 1 $aSONSTEGARD, T. S.
700 1 $aHIGA, R. H.
700 1 $aROSA, A. do N.
700 1 $aSIQUEIRA, F.
700 1 $aSILVA, L. O. C. da
700 1 $aTORRES JUNIOR, R. A. de A.
700 1 $aCOUTINHO, L. L.
700 1 $aMUDADU, M. de A.
700 1 $aALENCAR, M. M. de
700 1 $aREGITANO, L. C. de A.
773 $tAnimal Genetics$gv. 45, n. 6, p. 771-781, dec. 2014
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Esconder MarcMostrar Marc Completo |
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Registro original: |
Embrapa Pecuária Sudeste (CPPSE) |
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Biblioteca |
ID |
Origem |
Tipo/Formato |
Classificação |
Cutter |
Registro |
Volume |
Status |
Fechar
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Registro completo
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Biblioteca(s): |
Catálogo Coletivo de Periódicos Embrapa; Embrapa Florestas; Embrapa Meio Ambiente; Embrapa Meio-Norte; Embrapa Trigo. |
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Identificador: |
69 |
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Data corrente: |
09/05/2002 |
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Data da última atualização: |
30/04/2015 |
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Código do título: |
0900016 |
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ISSN: |
0301-2123 |
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Código CCN: |
000690-4 |
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Título e Subtítulo: |
ACTA BIOLOGICA PARANAENSE |
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Entidade: |
Instituto de Biologia da Universidade Federal do Parana |
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Local de publicação: |
Curitiba, PR |
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Periodicidade: |
Irregural |
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Inicio de publicação: |
1972 |
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Coleções da unidade: |
Embrapa Florestas
1972 1(1/2,3/4); 1975 4(1/2,3/4); 1976 5(3/4); 1983 12(1/4); 1985 14(1/4); 1986 15(1/4); 1987 16(1/4); 1988 17(1/4); 1989 18(1/4); 1990 19(1/4); 1991 20(1/4); 1992 21(1/4); 1994 23(1/4); 1995 24(1/4); 1996 25(1/4); 1997 26(1/4); 1998 27(1/4); 1999 28(1/4); 2000 29(1/4); 2001 30(1/4); 2002 31(1/4); 2003 32(1/4); 2004 33(1/4); 2005 34(1/4); 2006 35(1/2,3/4); 2007 36(1/2,3/4); 2008 37(1/2,3/4); 2009 38(1/2,3/4); 2010 39(1/2,3/4); 2011 40(1/2,3/4); 2012 41(1/2,3/4)
Embrapa Meio Ambiente
1972/2012 1(1/2); 4 (1/2,3/4); 5(1/2,3/4); 6(1/4); 8; 7(1/4); 8(1/4); 9(1/4); 10(1/4); 11(1/4); 12(1/4); 13(1/4); 14(1/4); 15(1/4); 16(1/4); 17(1/4); 18(1/4); 19(1/4); 20(1/4); 21(1/4); 22(1/4); 23(1/4); 24(1/4); 25(1/4); 26(1/4); 27(1/4); 28(1/4); 29(1/4); 30(1/4); 31(1/4); 32(1/4); 33(1/4); 34(1/4); 35(1/2, 3/4); 36(1/4); 37(1/4); 38(1/4); 39(1/4); 40(1/4); 41(1/4)
Embrapa Meio-Norte
1972 1(1/2); 1985-2008 14-38; 2011 40(1-4); 2012 41(1/4)
Classificação: 574.05
Embrapa Trigo
1972/91 1 1972; 2 1973; 3 1974; 4 1975; 5 1976; 6 1977; 7 1978; 8 1979; 9 1980; 10 1981; 11 1982; 12 1983; 13 1984; 14 1985; 15 1986; 16 1987; 18 1989; 19 1990; 20 1991; 28(1-4) 1999.
Classificação: 574.05 |
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